PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G099800.1
Common NamePHAVU_005G099800g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 464aa    MW: 50988.4 Da    PI: 9.0063
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G099800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.7e-056082123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C k F r  nL+ H r H
  Phvul.005G099800.1 60 FVCEICLKGFQRDQNLQLHRRGH 82
                        89*******************88 PP

2zf-C2H213.50.00021136158123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k++  +s+ k H +t+
  Phvul.005G099800.1 136 WKCEKCSKRYAVQSDWKAHSKTC 158
                         58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-45982IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.3056082IPR007087Zinc finger, C2H2
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-4124157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.31E-5131180No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MLEKMDDGEI SNAFPLQNPS TAASNQPPAL KRKRNLPGNP DPEAEVIALS PKTLMATNRF  60
VCEICLKGFQ RDQNLQLHRR GHNLPWKLKQ RTSKEVRKRV YVCPEKTCVH HHPSRALGDL  120
TGIKKHFCRK HGEKKWKCEK CSKRYAVQSD WKAHSKTCGT REYKCDCGTI FSRRDSFITH  180
RAFCDALAEE TARVNAASNI SNYSIMQNPL GPNMTTHFSS FFKPNSCPEE PLLGNQTSKG  240
LSLWMTQTSQ AHQTIANNNL HEFQQLGSAT SPTSIYCGGG GGNPLAPCSN PPPSNYQLNW  300
VFGNKLSSNG SQELTSSASL PLVDNIVKDN PNLQLISVPS LYSSQHQSHQ TTSANMSATA  360
LLQKAAQIGT TSSDPSLFLG SIGLKCNSPG QDGNKFCGMY GSSSVLTSHE GENNYSGDLS  420
QMPPAKRRHV QNEESAWGQT RDFLGVGGAN HLPPFINQRM DLI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007149800.10.0hypothetical protein PHAVU_005G099800g
SwissprotQ9ZWA61e-145IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLV7BV210.0V7BV21_PHAVU; Uncharacterized protein
STRINGGLYMA13G36960.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46262951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-143C2H2 family protein